options.py File Reference

Namespaces
	options
	A file for preparing, explaining and validating options.

Functions
def	options.validate_all_options (options)
	A method to validate all options. More...
def	options._align_nucleobase (base_options)
	Aligns the provided nucleobase to purine or pyrimidine in the nucleic acid base pair standard reference frame. More...
def	options._validate_input_file (file_name)
	Method to validate that the given file exists. More...
def	options._validate_atom_indices (indices)
	Method to validate provided lists of atom indices. More...
def	options._validate_helical_parameters (hp_i)
	Method to validate provided helical parameters for each parameter. More...
def	options._validate_energy_filter (energy_filter)
	Method to validate provided energy filter. More...
def	options._validate_strand (strand)
	Method to validate provided strand sequence. More...
def	options._validate_bool_list (x)
	Method to validate a list of bools. More...

Variables
dictionary	options._options_dict = {}
	Nucleic acid builder options used in the driver. More...

Detailed Description

A file for preparing, explaining and validating options